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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4139432_4144513_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4139432 - 4144513
Intron Length:
5082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAG
U12 Branch Point Sequence:
GCTCTGGTGACA
Flanking Amino Acid:
TPTKKPVKRPGTIRKAQNLL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
49.9
-0
1.7
58.5
47.9
Major PPT
62
0.27
1.1
56.1
43.5
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
40.1
-0.7
2.5
51.56
40.5

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033367
4129105 - 4149293
20189