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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4144682_4146171_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4144682 - 4146171
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCATT
5'SS Class:
major
3'SS Sequence:
CTCGTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATTTATAATC
Flanking Amino Acid:
GWLVENGRNQDFMTVYFQIR
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
77.8
38.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.7
0.58
0.8
73.4
31.6
Minor 5ss
38.5
-1.3
3.4
56.4
48
Minor BPS
61.1
0.33
1.5
71.44
33.7

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189
ENSAPLT00000003410
4129105 - 4149293
20189