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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4147066_4147543_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4147066 - 4147543
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
AKDTEKIIKEGPTGRLEEYL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
85.4
28
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189
ENSAPLT00000003410
4129105 - 4149293
20189