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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4147729_4148423_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4147729 - 4148423
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGGAA
U12 Branch Point Sequence:
ATGCCCTCAGCT
Flanking Amino Acid:
EKSDQLTKNMVSILSSFESR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
53.7
0.2
1.8
72.7
43.7

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003410
4129105 - 4149293
20189
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189