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Intron Name: Anas_platyrhynchos_platyrhynchos_19_4161316_4163848_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4161316 - 4163848

Intron Length:

2533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGGGTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAA

U12 Branch Point Sequence:

AGGCGCTCAACC

Flanking Amino Acid:

YFRHADPTWQNSIRHNLSLN

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

58.2

0.2

1.1

37.5

Major PPT

0.43

61.5

44.5

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

-0.2

55.63

42.2

Associated Gene:

Gene:

FOXJ1

Ensembl Gene ID:

ENSAPLG00000003960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004051

4160497 - 4164349

3853