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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4176339_4176547_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4176339 - 4176547
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCGGGGGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TCCTCCTGACCG
Flanking Amino Acid:
VDPSEWTEEELGFDLDREVF
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
50.1
0
1.1
44.7
41.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
53.4
-0
1.9
59.75
47.8

Associated Gene:

Gene:
RNF157
Ensembl Gene ID:
ENSAPLG00000004013
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023120
4173593 - 4181230
7638
ENSAPLT00000004126
4173593 - 4181230
7638