About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4216907_4217320_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4216907 - 4217320
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
TCTCAATGAATC
Flanking Amino Acid:
KLLASMLAKAGLTHIITMDL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
80.8
0.69
0.7
80.3
25
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
46.7
-0.2
1.8
59.28
39.3

Associated Gene:

Gene:
PRPSAP1
Ensembl Gene ID:
ENSAPLG00000016307
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017023
4208293 - 4228149
19857