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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4221542_4222904_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4221542 - 4222904
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTGTTTTCATT
Flanking Amino Acid:
KSVVYQETNGETRVEIKESV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.8
73.5
31
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
48.3
-0
1.8
64.47
41.5

Associated Gene:

Gene:
PRPSAP1
Ensembl Gene ID:
ENSAPLG00000016307
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017023
4208293 - 4228149
19857