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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4222958_4227727_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4222958 - 4227727
Intron Length:
4770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCGTTTCTAACT
Flanking Amino Acid:
ACTELAKRITERLGAELGKS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
63
37.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.6
0.8
0.7
77.5
31.2
Minor 5ss
29.8
-2.3
3.1
32.5
35.7
Minor BPS
53.3
0.18
1.7
67.19
44.3

Associated Gene:

Gene:
PRPSAP1
Ensembl Gene ID:
ENSAPLG00000016307
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017023
4208293 - 4228149
19857