About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4237037_4237493_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4237037 - 4237493
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
CCGTCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
AAGCCCCAAACT
Flanking Amino Acid:
ALAASINYYAGNDHVAKKKL
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43.4
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
71.4
0.48
0.8
64.9
30.6
Minor 5ss
36.5
-1.5
3.2
42.7
44.4
Minor BPS
48
-0
2
66.16
43.8

Associated Gene:

Gene:
SPHK1
Ensembl Gene ID:
ENSAPLG00000026651
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032634
4231558 - 4238235
6678