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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4246231_4246732_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4246231 - 4246732
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAA
U12 Branch Point Sequence:
CGTGGCTCAATC
Flanking Amino Acid:
IMVKTFEDRMDLFSALIKGP
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
90.7
24.3
Major BPS
52.8
0.07
1.3
57.3
41.7
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
28.4
-2.5
4.3
45.9
43.7
Minor BPS
45.9
-0.3
2
54.76
43.8

Associated Gene:

Gene:
UBE2O
Ensembl Gene ID:
ENSAPLG00000001208
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001290
4242009 - 4297709
55701