Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4248535_4250875_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4248535 - 4250875

Intron Length:

2341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGTCC

5'SS Class:

strong_major

3'SS Sequence:

GTTCTCCTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAC

U12 Branch Point Sequence:

TCTCCTCTAACC

Flanking Amino Acid:

DNSKTIILPQHLYNIESEIE

Intron Amino Acid Position:

734

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

72.6

Major BPS

72.3

0.55

73.3

28.9

Major PPT

80.4

0.68

0.8

77.9

30.9

Minor 5ss

32.6

-2

3.2

41.8

45.1

Minor BPS

62.1

0.36

1.7

72.58

38.5

Associated Gene:

Gene:

UBE2O

Ensembl Gene ID:

ENSAPLG00000001208

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001290

4242009 - 4297709

55701