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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4254875_4257347_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4254875 - 4257347
Intron Length:
2473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
CTTCTGGTAACT
Flanking Amino Acid:
KISREFKPGDRVAVEVVTTM
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
81.3
0.7
0.9
72.6
42.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
46.1
-0.2
2.6
72.32
44.9

Associated Gene:

Gene:
UBE2O
Ensembl Gene ID:
ENSAPLG00000001208
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001290
4242009 - 4297709
55701