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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4260509_4262228_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4260509 - 4262228
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TCTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TCTTTCCCCACA
Flanking Amino Acid:
YDVCPHVSDSGLFFDDSYGF
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
82.1
0.72
0.7
76.7
25.5
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
45.7
-0.3
2.2
63.62
42.9

Associated Gene:

Gene:
UBE2O
Ensembl Gene ID:
ENSAPLG00000001208
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001290
4242009 - 4297709
55701