Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4263902_4264847_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4263902 - 4264847

Intron Length:

946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGAATG

5'SS Class:

major

3'SS Sequence:

GTTTTCTTCGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

ATGTTTATAAGC

Flanking Amino Acid:

VNSKDLQHIWPFMYGDYIAY

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.68

71.5

40.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

81.2

0.7

0.8

77.3

31.4

Minor 5ss

31.2

-2.1

32.3

Minor BPS

48.5

-0.1

1.8

60.64

39.1

Associated Gene:

Gene:

UBE2O

Ensembl Gene ID:

ENSAPLG00000001208

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001290

4242009 - 4297709

55701