About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4264959_4270381_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4264959 - 4270381
Intron Length:
5423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTGTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TCTTTTGTGATT
Flanking Amino Acid:
RDVVRHMSSSDSQCGTVIDV
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
71.8
38.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
81.3
0.71
0.9
78.1
40.1
Minor 5ss
37.3
-1.4
3.3
51.5
44.9
Minor BPS
50.9
0.11
2
73.17
39

Associated Gene:

Gene:
UBE2O
Ensembl Gene ID:
ENSAPLG00000001208
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001290
4242009 - 4297709
55701