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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4306744_4306851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4306744 - 4306851
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCG
Flanking Amino Acid:
AISVFEIEREAFISVSGDCP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.4
0.64
0.7
72
26.1
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
41.3
-0.8
2.2
42.53
48.6

Associated Gene:

Gene:
AANAT
Ensembl Gene ID:
ENSAPLG00000002567
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002578
4306587 - 4307569
983