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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4307007_4307263_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4307007 - 4307263
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
GCCCCGCTAACC
Flanking Amino Acid:
SLWDQDRLSQAALTLHKPRG
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
44
-0.4
2.3
53.33
44.1

Associated Gene:

Gene:
AANAT
Ensembl Gene ID:
ENSAPLG00000002567
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002578
4306587 - 4307569
983