Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4315421_4315786_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4315421 - 4315786

Intron Length:

366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGGGTT

5'SS Class:

major

3'SS Sequence:

CTCGCGTGGCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTGAC

U12 Branch Point Sequence:

GTGGGTGTGACG

Flanking Amino Acid:

RQTSLSQSIRKGTAEWFGVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

0.9

75.8

33.6

Major BPS

53.6

0.09

1.4

48.8

46.3

Major PPT

56.3

0.14

1.1

43.9

Minor 5ss

31.4

-2.1

3.8

46.6

43.4

Minor BPS

38.3

-1

2.3

41.97

43.8

Associated Gene:

Gene:

RHBDF2

Ensembl Gene ID:

ENSAPLG00000002889

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022185

4309521 - 4316349

6829

ENSAPLT00000002941

4309521 - 4317098

7578