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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4316185_4316956_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4316185 - 4316956
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGACA
5'SS Class:
major
3'SS Sequence:
CCCTCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
CCTCCCCAAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.3
72.3
39
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
74.3
0.55
0.7
68.2
25.3
Minor 5ss
28
-2.5
2.8
32.6
41.8
Minor BPS
46.3
-0.3
2
55.96
42.9

Associated Gene:

Gene:
RHBDF2
Ensembl Gene ID:
ENSAPLG00000002889
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002941
4309521 - 4317098
7578