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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4342257_4432661_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4342257 - 4432661
Intron Length:
90405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCGA
5'SS Class:
strong_major
3'SS Sequence:
AGAGGTGGGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAGAAAT
U12 Branch Point Sequence:
AGATCGAGAGGT
Flanking Amino Acid:
MTKEELEEEQRSEEISEAEK
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
69.1
43.5
Major BPS
46.7
-0.2
1.3
51
41.5
Major PPT
42.3
-0.4
1.2
29
40.6
Minor 5ss
32.5
-2
3
41.8
44.6
Minor BPS
33.8
-1.1
2.4
50.27
42.7

Associated Gene:

Gene:
CYGB
Ensembl Gene ID:
ENSAPLG00000003674
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034260
4334869 - 4443846
108978