Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4377793_4377975_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4377793 - 4377975

Intron Length:

183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGACCC

5'SS Class:

major

3'SS Sequence:

GTCCCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAG

U12 Branch Point Sequence:

CCCCCCCCAGGC

Flanking Amino Acid:

YGFTRIPQAEDLKYIFIPSD

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

59.5

39.8

Major BPS

39.5

-0.6

1.5

43.7

39.4

Major PPT

73.3

0.52

0.8

65.8

30.2

Minor 5ss

26.4

-2.7

3.1

33.7

41.8

Minor BPS

34.6

-1.1

36.3

40.7

Associated Gene:

Gene:

ST6GALNAC2

Ensembl Gene ID:

ENSAPLG00000029589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026973

4376481 - 4384081

7601

ENSAPLT00000025834

4376481 - 4380017

3537