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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4392470_4393530_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4392470 - 4393530
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTCCAC
U12 Branch Point Sequence:
AGCTGCTCCACG
Flanking Amino Acid:
HPDFLRYMKNRFLKSKSLQK
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
44.9
-0.3
1.4
52.1
43.1
Major PPT
82.2
0.72
0.8
76.8
31.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
41.7
-0.8
2.3
46.49
46.1

Associated Gene:

Gene:
ST6GALNAC1
Ensembl Gene ID:
ENSAPLG00000021298
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023360
4390785 - 4409676
18892