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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4400097_4409578_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4400097 - 4409578
Intron Length:
9482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACCC
5'SS Class:
major
3'SS Sequence:
TTCCTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
MGGNAVRPFSIFQRVP
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.3
38.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
82.5
0.73
0.8
81.3
29.6
Minor 5ss
33.3
-1.9
3
43.9
43.3
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
ST6GALNAC1
Ensembl Gene ID:
ENSAPLG00000021298
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023360
4390785 - 4409676
18892