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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_443061_443152_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
443061 - 443152
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCCTTCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAGAA
U12 Branch Point Sequence:
CTGAGCAGAAGC
Flanking Amino Acid:
KERYAAWMIYTYSGLFCVTV
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
46.4
-0.2
1
38.4
32.3
Major PPT
77.5
0.62
0.7
72
26.1
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
37
-1
2.1
44.55
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005481
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005657
441479 - 443593
2115