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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_443297_443386_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
443297 - 443386
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCTTTCATT
Flanking Amino Acid:
KVTVKTEGGETLTVKEDQIF
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.2
0.61
1
73.7
36.2
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
68.6
0.67
1.7
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005481
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005657
441479 - 443593
2115