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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4436263_4443393_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4436263 - 4443393
Intron Length:
7131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCTTTTATCC
Flanking Amino Acid:
EEEKEKKDTKEEDPDSESEK
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
0.8
70.8
35.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
57.9
0.23
1.6
67.98
37.6

Associated Gene:

Gene:
CYGB
Ensembl Gene ID:
ENSAPLG00000003674
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034260
4334869 - 4443846
108978