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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4453257_4453928_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4453257 - 4453928
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
CTTCGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
SSSSSDSDSECDSGSETEGM
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.6
0.69
0.9
77.4
35.6
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
JMJD6
Ensembl Gene ID:
ENSAPLG00000004061
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004179
4450676 - 4459962
9287