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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4454299_4455588_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4454299 - 4455588
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAC
U12 Branch Point Sequence:
TTTGTGTTTACA
Flanking Amino Acid:
QKPGETVFVPGGWWHVVLNL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.9
33.4
Major BPS
59.8
0.24
1.3
63.1
44.5
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
34.9
-1.7
2.8
43.6
43.5
Minor BPS
48.5
-0.1
2.4
70.34
42.1

Associated Gene:

Gene:
JMJD6
Ensembl Gene ID:
ENSAPLG00000004061
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004179
4450676 - 4459962
9287