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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4470856_4471237_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4470856 - 4471237
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTATGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTTGTTATGT
Flanking Amino Acid:
GSSGYGRRSRSPRRRRRSRS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.2
0.59
0.9
73.8
41.4
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
46
-0.2
2.5
70.48
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004172
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004270
4470552 - 4471631
1080