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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4474609_4474800_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4474609 - 4474800
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAAAC
Flanking Amino Acid:
MGEGLSVETEGKT
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.8
0.67
0.9
77.5
34.6
Minor 5ss
30.2
-2.3
3.3
39.5
46.1
Minor BPS
70.1
0.61
1.3
74.65
36.2

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528