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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4474992_4476452_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4474992 - 4476452
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTCCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTGATT
Flanking Amino Acid:
TAFQTCGNIAQTVITNLNST
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
67.4
44
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.4
0.8
0.7
80.2
25.2
Minor 5ss
35.4
-1.7
3.6
49
47.2
Minor BPS
63.4
0.5
1.5
81.38
33.9

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528