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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4477615_4478049_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4477615 - 4478049
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CATTCAATAAAC
Flanking Amino Acid:
LSMVVSGLFYSLYIAVFIQP
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
85.7
0.8
0.8
77.4
36.9
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
48.9
-0.1
2
63.55
41

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528