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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4478130_4478227_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4478130 - 4478227
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTCTTGACC
Flanking Amino Acid:
ASVFIGIAAAVLWTAQGNCL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.9
36.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
70.2
0.45
1.1
65.9
44
Minor 5ss
42.4
-0.8
3.5
61.3
44.6
Minor BPS
79.5
0.91
1
82.32
31.1

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528