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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4480593_4482522_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4480593 - 4482522
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TGACTCTTACTT
Flanking Amino Acid:
FAWQGKTYITESDRRTVFIA
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
84.7
0.78
0.8
76.5
37.6
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
56.1
0.27
1.6
70.64
40.4

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528