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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4486440_4487337_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4486440 - 4487337
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCTGGTTTAATT
Flanking Amino Acid:
GIFIGVGEILGGGIFGLLSK
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.5
0.71
0.8
75.7
32.8
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
58
0.33
1.9
74.65
43.4

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528