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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4487513_4488507_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4487513 - 4488507
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGATTCTCAAAT
Flanking Amino Acid:
GTDGVAYMIPSKEVAIFCSF
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
90.6
0.91
0.6
89
20.1
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
59.7
0.38
1.6
75.38
40.6

Associated Gene:

Gene:
MFSD11
Ensembl Gene ID:
ENSAPLG00000004205
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004337
4474599 - 4490126
15528