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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4520205_4533656_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4520205 - 4533656
Intron Length:
13452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CAGATCTGACCA
Flanking Amino Acid:
GDSPFTIRTEVMGALESRGV
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
72.7
0.51
0.9
66.4
35.7
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
44.8
-0.4
1.7
49.47
41.4

Associated Gene:

Gene:
MGAT5B
Ensembl Gene ID:
ENSAPLG00000006308
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006553
4520039 - 4557152
37114