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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4543163_4543594_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4543163 - 4543594
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GCTGCCTCACCC
Flanking Amino Acid:
ILRNSLMSAKMGDGRRDQCE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
48.3
-0.1
2
59.01
45.8

Associated Gene:

Gene:
MGAT5B
Ensembl Gene ID:
ENSAPLG00000006308
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006553
4520039 - 4557152
37114