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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4543669_4544784_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4543669 - 4544784
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
GTTTCTTTGCCC
Flanking Amino Acid:
KYPDCAGKVEWMRARWTSDP
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
68.8
43.8
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
75.1
0.57
0.8
68.1
32
Minor 5ss
28.2
-2.5
2.7
32.3
42.2
Minor BPS
47.7
-0.2
3.5
74.18
37

Associated Gene:

Gene:
MGAT5B
Ensembl Gene ID:
ENSAPLG00000006308
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006553
4520039 - 4557152
37114