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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4545562_4546136_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4545562 - 4546136
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGAACA
5'SS Class:
major
3'SS Sequence:
CTCCCGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGGGCACTGACC
Flanking Amino Acid:
LKGRQRDQKHILVHIGFLTE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
65.3
40.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.8
0.45
0.8
60.6
35.2
Minor 5ss
33.7
-1.9
3.1
40.2
38.9
Minor BPS
45.1
-0.4
2
56.57
41.9

Associated Gene:

Gene:
MGAT5B
Ensembl Gene ID:
ENSAPLG00000006308
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006553
4520039 - 4557152
37114