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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4556038_4556971_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4556038 - 4556971
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTGAC
U12 Branch Point Sequence:
GGGGACGTGACC
Flanking Amino Acid:
QHMGLSFKKYRCRVRVIDTF
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
50
0
1.2
42.7
39.5
Major PPT
80.5
0.69
0.7
72.6
32.1
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
41.5
-0.6
2.2
47.93
41.9

Associated Gene:

Gene:
MGAT5B
Ensembl Gene ID:
ENSAPLG00000006308
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006553
4520039 - 4557152
37114