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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4653476_4655409_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4653476 - 4655409
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTAACTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCCTTTTAACT
Flanking Amino Acid:
VIINEHCCYTVHPDNEDWTC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.2
0.5
0.9
67.7
37.7
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
67.5
0.63
1.3
76.22
41

Associated Gene:

Gene:
SEC14L1
Ensembl Gene ID:
ENSAPLG00000005887
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028608
4629824 - 4669849
40026
ENSAPLT00000006149
4629852 - 4671860
42009