Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4667059_4667537_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4667059 - 4667537

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGATTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTGTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAT

U12 Branch Point Sequence:

TGTTGTCTAATA

Flanking Amino Acid:

ASVFKGAPHEVLIQIVDASS

Intron Amino Acid Position:

538

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

37.1

Major BPS

76.7

0.66

1.2

77.9

34.9

Major PPT

78.1

0.63

0.8

32.5

Minor 5ss

47.6

-0.2

2.8

64.3

47.2

Minor BPS

50.7

0.02

68.43

38.4

Associated Gene:

Gene:

SEC14L1

Ensembl Gene ID:

ENSAPLG00000005887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006149

4629852 - 4671860

42009

ENSAPLT00000028608

4629824 - 4669849

40026