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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4669663_4671844_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4669663 - 4671844
Intron Length:
2182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCCA
5'SS Class:
major
3'SS Sequence:
CTCTCTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTCT
U12 Branch Point Sequence:
TCTTCTCTCTCT
Flanking Amino Acid:
SQSHSSSMISRWRFC*
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
56
42.8
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
81.9
0.72
0.7
80
25.3
Minor 5ss
29.7
-2.3
3.4
39.7
45.8
Minor BPS
38.9
-0.7
3.6
71.91
45.3

Associated Gene:

Gene:
SEC14L1
Ensembl Gene ID:
ENSAPLG00000005887
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006149
4629852 - 4671860
42009