About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4704486_4705193_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4704486 - 4705193
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
TCTCTCTTACCA
Flanking Amino Acid:
WLVLRNLTPQIDGSTLRTLC
Intron Amino Acid Position:
1729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
79.9
0.67
0.8
73.8
35.5
Minor 5ss
40.6
-1
2.6
51.9
44.6
Minor BPS
63
0.4
1.6
72.02
40.3

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943