Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4712848_4713920_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4712848 - 4713920

Intron Length:

1073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGTCAC

5'SS Class:

major

3'SS Sequence:

CTGTTCTTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

TGTTCTTTAAAG

Flanking Amino Acid:

SSLDQNSSKHGAIPGGLSIG

Intron Amino Acid Position:

1489

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

65.3

40.6

Major BPS

72.7

0.57

72.1

31.1

Major PPT

73.8

0.54

74.4

34.3

Minor 5ss

41.1

-1

2.8

53.5

43.8

Minor BPS

72.5

0.57

1.4

73.53

38.6

Associated Gene:

Gene:

TNRC6C

Ensembl Gene ID:

ENSAPLG00000005456

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005667

4702793 - 4757735

54943