Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4714089_4715797_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4714089 - 4715797

Intron Length:

1709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCCCCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

ATGTAATGACCT

Flanking Amino Acid:

SPNTFAPYPLAGLNPNMNVN

Intron Amino Acid Position:

1433

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

0.9

74.1

34.7

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

76.3

0.59

0.8

74.7

30.6

Minor 5ss

43.5

-0.7

3.1

57.4

41.8

Minor BPS

44.6

-0.3

2.1

65.79

44.1

Associated Gene:

Gene:

TNRC6C

Ensembl Gene ID:

ENSAPLG00000005456

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005667

4702793 - 4757735

54943