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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4716440_4717727_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4716440 - 4717727
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GACCTCTGACCT
Flanking Amino Acid:
MLNQLYQLQLAYQRLQIQQQ
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.4
0.64
0.8
73.4
31.2
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
46.8
-0.1
1.7
60
43

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943