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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4717842_4718328_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4717842 - 4718328
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTAGGTTCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TATTCCTTAGGT
Flanking Amino Acid:
AQVPQFLSPQHSFCSLQQKN
Intron Amino Acid Position:
1290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
59.8
0.22
1.2
55.5
43.6
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
67.6
0.63
1.9
85.36
40.8

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943